Tijana's web page

Software

Check out GraphCrunch, our new network analysis and modeling software, published in BMC Bioinformatics (highly accessed).

Refereed Journal Publications

7. Vesna Memisevic, Tijana Milenkovic, and Natasa Przulj (2009), An integrative approach to modeling biological networks, arXiv:0906.0125v1 [q-bio.MN], submitted.

6. Oleksii Kuchaiev^‡, Tijana Milenkovic^‡, Vesna Memisevic, Wayne Hayes, and Natasa Przulj (2009), Topological network alignment uncovers biological function and phylogeny, arXiv:0810.3280v3 [q-bio.MN], submitted.

^‡These authors contributed equally to this work

5. Tijana Milenkovic, Vesna Memisevic, Anand K. Ganesan, and Natasa Przulj (2009), Systems-level Cancer Gene Identification from Protein Interaction Network Topology Applied to Melanogenesis-related Interaction Networks, Journal of the Royal Society Interface, doi: 10.1098/rsif.2009.0192.

4. Tijana Milenkovic^‡, Ioannis Filippis^‡, Michael Lappe, and Natasa Przulj (2009), Optimized Null Model for Protein Structure Networks, PLoS ONE 4(6): e5967.

^‡These authors contributed equally to this work

3. C. Guerrero, T. Milenkovic, N. Przulj, J. J. Jones, P. Kaiser, L. Huang (2008) Characterization of the Yeast Proteasome Interaction Network by QTAX-Based Tag-Team Mass Spectrometry and Protein Interaction Network Analysis, PNAS 105(36): 13333–13338.

2. Tijana Milenkovic and Natasa Przulj (2008) Uncovering Biological Network Function via Graphlet Degree Signatures; Cancer Informatics 2008:6 257–273.

1. Tijana Milenkovic, Jason Lai, and Natasa Przulj (2008) GraphCrunch: a tool for large network analyses, BMC Bioinformatics 9:70. Highly accessed.

Refereed Book Chapters

1. Natasa Przulj and Tijana Milenkovic, Computational Methods for Analyzing and Modeling Biological Networks, a chapter in “Biological Data Mining”, edited by Jake Chen and Stefano Lonardi, Chapman & Hall/CRC; 1 edition, September 1, 2009.

Theses

1. Tijana Milenkovic, Interplay of topology and biology in protein-protein interaction networks, MS thesis, Computer Science, University of California, Irvine, June 2008.