MDOS: a method for Motif Discovery using Orthologous Sequences
MDOS is a comparative genomics method for regulatory motif
discovery. Different from previous methods, it does not require or
use sequence alignments. It is particularly suitable for discovering
motifs in highly diverged genomes, or genomes with sequence alignments
difficult to obtain or poor in quality.
The code is written in Java and can be downloaded from
here.
You will need Java version 1.5 or above to run the code.
Supplementary Data
Supplementary Tables