Methodology Limitation Input Format Output Format
           PFRMAT DP
           TARGET Query-Name 
           AUTHOR baldi-group-server 
           REMARK Predictor remarks
           METHOD Description of methods used
           METHOD Description of methods used
           METHOD Description of methods used
           MODEL  1
           1 H 1 0.90  #Format: residue index, residue name, predicted domain index, confidence score of prediction.        
           2 L 1 0.90  #In this example, two predicted domains: Residues 1-9 are in domain 1, others in domain 2.    
           3 E 1 0.90       
           4 G 1 0.90           
           5 S 1 0.90          
           6 I 1 0.90         
           7 G 1 0.60
           8 I 1 0.60
           9 L 1 0.80
           10 L 2 0.80
           11 K 2 0.90
           12 K 2 0.90
           13 H 2 0.90
           14 E 2 0.90
           15 I 2 0.90
           16 V 2 0.75
           17 F 2 0.60
           18 D 2 0.90
           19 G 2 0.90
           20 C 2 0.90
           END
Performance

Reference


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