Package CHEM :: Package Web :: Package cgibin :: Package reaction :: Module MechanismExample :: Class MechanismExample

Class MechanismExample

            BaseWeb.BaseWeb --+    
                              |    
BaseReactionWeb.BaseReactionWeb --+
                                  |
                                 MechanismExample

Instance Methods

[hide private]

__init__(self)
Constructor.

action_default(self)
Primary action method, presumably given a target compound structure and a set of (retro) reaction models / reagents to try on it.

__renderArrows(self, productInfo)

__marvinStr(self, smi, arrowStr)

__patchMarvinLine(self, line)
Manual override corrections if needed

__orbitalAttackStr(self, homo, lumo)

__orbitalStr(self, orb, occupied=True)

Inherited from BaseWeb.BaseWeb: action_uploadFiles, addHandler, clearHandlers, errorResponse, getTemplateFilename, handleRequest, maintainParams, optionTagsFromField, optionTagsFromList, printTemplate, replaceWhitespace, response, setTemplateFilename

Static Methods

[hide private]

Inherited from BaseWeb.BaseWeb: javascriptString, quoteFilepath, quoteSmiles, unquoteSmiles

Class Variables

[hide private]

reagents = <CHEM.DB.rdb.search.NameRxnPatternMatchingModel.Sea...

reagentsById = <CHEM.DB.rdb.search.NameRxnPatternMatchingModel...

retroReagentsById = {}

Inherited from BaseWeb.BaseWeb: FILE_FIELD_SUFFIX, OPTIONS_FIELD_SUFFIX, OPTION_TAG, SELECT_FIELD_SUFFIX, TEMPLATE_SUFFIX, UPLOAD_FILE_CMD, disableResponse, mForm, mHandlers, mTemplateDict, mTemplateFilename, req, requestData

Method Details

[hide private]

init(self)
(Constructor)

Constructor. Just some initializations such as addition of default mTemplateDict values. Be sure the subclasses call this method in their own __init__!

Overrides: BaseReactionWeb.BaseReactionWeb.__init__: (inherited documentation)

Class Variable Details

[hide private]

reagents

Value:

None

reagentsById

Value:

None

Class MechanismExample

__init__(self) (Constructor)

reagents

reagentsById

init(self)
(Constructor)