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A
A
(in
CHEM.DB.rdb.search.NameRxnSoapModule
)
addOrderBy()
(in
SQLQuery
)
annotationDictsBySmiles()
(in
ChemicalDetail
)
ABC
(in
CHEM.datatype.finger
)
addParam()
(in
SQLQuery
)
AnnotationIDAnnotator
(in
CHEM.Annotation.AnnotationAnnotators
)
ABC()
(in
CHEM.datatype.pyFINGER
)
addProcessor()
(in
BaseDBPopulator
)
AnnotationIteratorPreparer
(in
CHEM.DB.DBPopulator
)
abc()
(in
BitBoundedSearch
)
addProcessor()
(in
BaseDBPopulator
)
AnnotationIteratorPreparer
(in
CHEM.DB.DBPopulator2
)
abc()
(in
CorrectedFingerSearch
)
addRangeCriteria()
(in
ChemicalSearchModel
)
AnnotationIteratorPreparer
(in
CHEM.DB.DBPopulator3
)
abc()
(in
CorrectedFingerSearch
)
addReactants()
(in
ReactionProcessor
)
AnnotationMetadata
(in
CHEM.DB.rdb.rdbsqlobject
)
abc()
(in
DictSearch
)
addSelect()
(in
SQLQuery
)
AnnotationSummarizer
(in
CHEM.Annotation
)
abc()
(in
FingerSearch
)
addSimilarMol()
(in
ChemicalSearchModel
)
AnnotationSummarizer
(in
CHEM.Annotation.AnnotationSummarizer
)
abc()
(in
GolombFingerSearch
)
addSimilarMolBySmiles()
(in
ChemicalSearchModel
)
AnnotationType
(in
CHEM.DB.rdb.rdbsqlobject
)
abc()
(in
GolombFingerSearch_MM
)
addStartingMaterialHints()
(in
ReactantsWeb
)
AnnotationTypeIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
abc()
(in
SetSearch
)
addSynthesisTreeTableSubRows()
(in
CHEM.CombiCDB.SynthesisUtil
)
annotator
(in
CHEM.Annotation.ChemicalAnnotators
)
ABC_swigregister
(in
CHEM.datatype.finger
)
addTopSim
(in
CHEM.ML.nnRnn.nearestNeighbors
)
annotator
(in
CHEM.Annotation.ReactionAnnotators
)
abcd
(in
CHEM.datatype.finger
)
addTopSim
(in
CHEM.ML.nnRnn.nearestNeighbors.extendNnOutputs
)
ANNOTATOR_CHECKBOX_TEMPLATE
(in
CHEM.Web.cgibin.tools.MolInfoWeb
)
abcd_swigregister
(in
CHEM.datatype.finger
)
addWhere()
(in
SQLQuery
)
annotatorCodes
(in
MolInfoWeb
)
acceptedAtomPair()
(in
ContactHistogramKernel
)
addWhereEqual()
(in
SQLQuery
)
AnnotatorProcessor
(in
CHEM.DB.BaseDBPopulator
)
acceptedAtomPair()
(in
ContactHistogramExtractor
)
addWhereIn()
(in
SQLQuery
)
AnnotatorsByColumn
(in
CHEM.Annotation.ChemicalAnnotators
)
ACID_CONC_HEAT
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
addWhereLike()
(in
SQLQuery
)
AnnotatorsByColumn
(in
CHEM.Annotation.ReactionAnnotators
)
acquire()
(in
Lockable
)
addWhereOp()
(in
SQLQuery
)
ANY_MOL
(in
CHEM.CombiCDB.test.TestMechanisms
)
acquire()
(in
Lockable
)
ADMIN_FOOTER_LINK_HREF
(in
CHEM.Web.cgibin.Links
)
ANY_MOL
(in
CHEM.CombiCDB.test.TestReagents
)
action0()
(in
MockWeb
)
ADMIN_FOOTER_LINK_TEXT
(in
CHEM.Web.cgibin.Links
)
AP_SRT
(in
CHEM.ML.nnRnn.NnRnn
)
action_addReactant()
(in
ReactantsWeb
)
ADMIN_FOOTER_LINKS
(in
CHEM.Web.cgibin.Links
)
APP_LOGGER_LEVEL
(in
CHEM.Annotation.test.Const
)
action_addReactionStep()
(in
VirtualSpaceSynthesisTreeWeb
)
ADMIN_HEADER_LINK_HREF
(in
CHEM.Web.cgibin.Links
)
APP_LOGGER_LEVEL
(in
CHEM.CombiCDB.test.Const
)
action_checkAvailability()
(in
VirtualSpaceSynthesisTreeWeb
)
ADMIN_HEADER_LINK_TEXT
(in
CHEM.Web.cgibin.Links
)
APP_LOGGER_LEVEL
(in
CHEM.Common.test.Const
)
action_clearPathway()
(in
PathwayWeb
)
ADMIN_HEADER_LINKS
(in
CHEM.Web.cgibin.Links
)
APP_LOGGER_LEVEL
(in
CHEM.DB.test.Const
)
action_clearProduct()
(in
PathwayWeb
)
ADMIN_NAV_LINK_HREF
(in
CHEM.Web.cgibin.Links
)
APP_LOGGER_LEVEL
(in
CHEM.Kernel.test.Const
)
action_clearState()
(in
VirtualSpaceSynthesisTreeWeb
)
ADMIN_NAV_LINK_TEXT
(in
CHEM.Web.cgibin.Links
)
APP_LOGGER_LEVEL
(in
CHEM.ML.Similarity.test.Const
)
action_closeState()
(in
PathwayWeb
)
ADMIN_NAV_LINKS
(in
CHEM.Web.cgibin.Links
)
APP_LOGGER_LEVEL
(in
CHEM.ML.features.test.Const
)
action_copyProduct()
(in
PathwayWeb
)
AdminIndex
(in
CHEM.Web.cgibin
)
APP_LOGGER_LEVEL
(in
CHEM.ML.test.Const
)
action_default()
(in
BabelWeb
)
AdminIndex
(in
CHEM.Web.cgibin.AdminIndex
)
APP_LOGGER_LEVEL
(in
CHEM.Structure.test.Const
)
action_default()
(in
CanSmiUniqueSetWeb
)
ADVANCED_RESULTS_LIMIT
(in
CHEM.Common.Const
)
APP_LOGGER_LEVEL
(in
CHEM.datatype.test.Const
)
action_default()
(in
ChemicalSearchWeb
)
AggregateSpectrumExtractor
(in
CHEM.ML.features
)
APP_LOGGER_LEVEL
(in
CHEM.feature.test.Const
)
action_default()
(in
JMEPopupWeb
)
AggregateSpectrumExtractor
(in
CHEM.ML.features.AggregateSpectrumExtractor
)
APP_LOGGER_LEVEL
(in
CHEM.search.test.Const
)
action_default()
(in
MSFragment
)
AggregateSpectrumKernel
(in
CHEM.Kernel
)
APP_LOGGER_LEVEL
(in
CHEM.test.Const
)
action_default()
(in
MolecularWeightPoolsWeb
)
AggregateSpectrumKernel
(in
CHEM.Kernel.AggregateSpectrumKernel
)
append()
(in
Tag
)
action_default()
(in
PatternCountScreenWeb
)
AggregationLogic
(in
CHEM.search.SEARCH
)
APPLICATION_NAME
(in
CHEM.Annotation.Const
)
action_default()
(in
PatternMatchCounterWeb
)
alcoholPattern
(in
Lipinski
)
APPLICATION_NAME
(in
CHEM.Annotation.test.Const
)
action_default()
(in
PolymerScreenWeb
)
alcoholSearch
(in
Lipinski
)
APPLICATION_NAME
(in
CHEM.CombiCDB.Const
)
action_default()
(in
Smi2DepictWeb
)
ALDOL_ADDITION
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
APPLICATION_NAME
(in
CHEM.CombiCDB.test.Const
)
action_default()
(in
ReactionProfileBrowse
)
ALDOL_CONDENSATION
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
APPLICATION_NAME
(in
CHEM.Common.Const
)
action_default()
(in
ReactionProfileViewWeb
)
alignMol()
(in
CHEM.Structure.Struct3d.structUtils
)
APPLICATION_NAME
(in
CHEM.Common.test.Const
)
action_default()
(in
ReactionStepBrowse
)
ALL_REACTIONS_ID
(in
CHEM.Web.cgibin.reaction.VirtualSpaceBuildingBlocksWeb
)
APPLICATION_NAME
(in
CHEM.DB.Const
)
action_default()
(in
ReactionStepViewWeb
)
ALL_REACTIONS_ID
(in
CHEM.Web.cgibin.reaction.VirtualSpaceCombiLibWeb
)
APPLICATION_NAME
(in
CHEM.DB.test.Const
)
action_default()
(in
FeedbackWeb
)
ALL_REACTIONS_ID
(in
CHEM.Web.cgibin.reaction.VirtualSpaceQueryWeb
)
APPLICATION_NAME
(in
CHEM.Kernel.Const
)
action_default()
(in
MechanismExample
)
allColumns()
(in
AnnotationIDAnnotator
)
APPLICATION_NAME
(in
CHEM.Kernel.test.Const
)
action_default()
(in
MechanismExplorerWeb
)
allColumns()
(in
FValueAnnotator
)
APPLICATION_NAME
(in
CHEM.ML.Similarity.Const
)
action_default()
(in
PathwayWeb
)
allColumns()
(in
BaseAnnotator
)
APPLICATION_NAME
(in
CHEM.ML.Similarity.test.Const
)
action_default()
(in
PrinterFriendlySynthesisProblem
)
allColumns()
(in
CompositeAnnotator
)
APPLICATION_NAME
(in
CHEM.ML.features.Const
)
action_default()
(in
ProblemRecordDetailWeb
)
allColumns()
(in
AtomBondCountAnnotator
)
APPLICATION_NAME
(in
CHEM.ML.features.test.Const
)
action_default()
(in
ProblemRecordWeb
)
allColumns()
(in
CanSmilesAnnotator
)
APPLICATION_NAME
(in
CHEM.ML.test.Const
)
action_default()
(in
ProductWeb
)
allColumns()
(in
ChemaxonLogPAnnotator
)
APPLICATION_NAME
(in
CHEM.Structure.Const
)
action_default()
(in
ProgressChecklistWeb
)
allColumns()
(in
ChemicalIDAnnotator
)
APPLICATION_NAME
(in
CHEM.Structure.test.Const
)
action_default()
(in
ReactantsWeb
)
allColumns()
(in
EnthalpyAnnotator
)
APPLICATION_NAME
(in
CHEM.Web.cgibin.Const
)
action_default()
(in
ReactionDrillWeb
)
allColumns()
(in
FingerprintAnnotator
)
APPLICATION_NAME
(in
CHEM.Web.cgibin.tools.Const
)
action_default()
(in
ReactionProcessorWeb
)
allColumns()
(in
HBondAcceptorAnnotator
)
APPLICATION_NAME
(in
CHEM.datatype.test.Const
)
action_default()
(in
ReactionStepViewWeb
)
allColumns()
(in
HBondDonorAnnotator
)
APPLICATION_NAME
(in
CHEM.feature.test.Const
)
action_default()
(in
ReactionTutorialSetupWeb
)
allColumns()
(in
InChiAnnotator
)
APPLICATION_NAME
(in
CHEM.search.test.Const
)
action_default()
(in
ReactionTutorialWeb
)
allColumns()
(in
IsoSmilesAnnotator
)
APPLICATION_NAME
(in
CHEM.test.Const
)
action_default()
(in
ReagentsWeb
)
allColumns()
(in
LogPAnnotator
)
apply()
(in
ElectronArrow
)
action_default()
(in
SurveyWeb
)
allColumns()
(in
MeltingPointAnnotator
)
applyAll()
(in
ElectronArrow
)
action_default()
(in
SynthesisPreparerWeb
)
allColumns()
(in
MolecularFormulaAnnotator
)
applyDistanceConstr()
(in
CHEM.Structure.Struct3d.spe
)
action_default()
(in
VirtualSpaceBuildingBlocksWeb
)
allColumns()
(in
MolecularWeightAnnotator
)
applyReaction()
(in
ReactionProcessor
)
action_default()
(in
VirtualSpaceCombiLibWeb
)
allColumns()
(in
NameAnnotator
)
applyReactionBySmirks()
(in
ReactionProcessor
)
action_default()
(in
VirtualSpaceQueryWeb
)
allColumns()
(in
OEFilterAnnotator
)
applyReactionRole()
(in
RDFReader
)
action_default()
(in
VirtualSpaceSynthesisTreeWeb
)
allColumns()
(in
RigidSegmentAnnotator
)
applyVolumeConstr()
(in
CHEM.Structure.Struct3d.spe
)
action_default()
(in
MolInfoWeb
)
allColumns()
(in
SolubilityAnnotator
)
aReactionProcessor
(in
MechanismExplorerWeb
)
action_default()
(in
MoleculeView
)
allColumns()
(in
XLogPAnnotator
)
aReactionProcessor
(in
ReactionStepDetailsWeb
)
action_default()
(in
UrlForward
)
allColumns()
(in
ZapAnnotator
)
aReactionStepDetailsWeb
(in
CHEM.Web.cgibin.reaction.ReactionStepDetailsWeb
)
action_formatDBFile()
(in
PatternMatchCounterWeb
)
allColumns()
(in
ReactionSmilesAnnotator
)
ARENEDIAZONIUM_BR
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_formatDBFile()
(in
ReactionProcessorWeb
)
allColumns()
(in
ReactionStepIDAnnotator
)
ARENEDIAZONIUM_CL
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_generateProduct()
(in
PathwayWeb
)
allValues()
(in
AnnotationIDAnnotator
)
ARENEDIAZONIUM_CN
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_loadState()
(in
PathwayWeb
)
allValues()
(in
FValueAnnotator
)
ARENEDIAZONIUM_F
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_loadState()
(in
VirtualSpaceSynthesisTreeWeb
)
allValues()
(in
BaseAnnotator
)
ARENEDIAZONIUM_H
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_nextPage()
(in
ChemicalSearchWeb
)
allValues()
(in
BaseAnnotator
)
ARENEDIAZONIUM_I
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_outputOnly()
(in
BabelWeb
)
allValues()
(in
CompositeAnnotator
)
ARENEDIAZONIUM_PREP_H2SO4
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_outputOnly()
(in
Smi2DepictWeb
)
allValues()
(in
AtomBondCountAnnotator
)
ARENEDIAZONIUM_PREP_HBR
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_outputOnly()
(in
ProblemRecordDetailWeb
)
allValues()
(in
ChemaxonLogPAnnotator
)
ARENEDIAZONIUM_PREP_HCL
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
action_outputOnly()
(in
ProblemRecordWeb
)
allValues()
(in
ChemicalIDAnnotator
)
AromaticChangeScreen
(in
CHEM.CombiCDB.ReactionScreen
)
action_preloadReactionSteps()
(in
ProductWeb
)
allValues()
(in
EnthalpyAnnotator
)
AromaticityExtractor
(in
CHEM.ML.features
)
action_preloadSynthesis()
(in
PrinterFriendlySynthesisProblem
)
allValues()
(in
FingerprintAnnotator
)
AromaticityExtractor
(in
CHEM.ML.features.AromaticityExtractor
)
action_prepareChemicals()
(in
IsomerDownloadWeb
)
allValues()
(in
HBondAcceptorAnnotator
)
AromaticityScore
(in
CHEM.CombiCDB.ReactionScore
)
action_prepareIsomers()
(in
IsomerDownloadWeb
)
allValues()
(in
HBondDonorAnnotator
)
ARROW_DELIM
(in
CHEM.CombiCDB.Const
)
action_prevPage()
(in
ChemicalSearchWeb
)
allValues()
(in
InChiAnnotator
)
assertEqualFile()
(in
ChemDBTestCase
)
action_removeReactant()
(in
PathwayWeb
)
allValues()
(in
IsoSmilesAnnotator
)
assertEqualGeneral()
(in
ChemDBTestCase
)
action_removeReactionStep()
(in
VirtualSpaceSynthesisTreeWeb
)
allValues()
(in
LogPAnnotator
)
assertEqualList()
(in
ChemDBTestCase
)
action_removeReagent()
(in
PathwayWeb
)
allValues()
(in
MeltingPointAnnotator
)
assertEqualTable()
(in
ChemDBTestCase
)
action_renderProduct()
(in
FeedbackWeb
)
allValues()
(in
MolecularFormulaAnnotator
)
AssertionError
action_renderReaction()
(in
FeedbackWeb
)
allValues()
(in
MolecularWeightAnnotator
)
ASYNCH_PREP_TEMPLATE
(in
CHEM.Web.cgibin.reaction.SynthesisPreparerWeb
)
action_renderReaction()
(in
MechanismExplorerWeb
)
allValues()
(in
NameAnnotator
)
atom
(in
Orbital
)
action_renderReaction()
(in
ReactionStepDetailsWeb
)
allValues()
(in
OEFilterAnnotator
)
ATOM_DELIM
(in
CHEM.CombiCDB.Const
)
action_renderSubmittedStepsTable()
(in
MechanismExplorerWeb
)
allValues()
(in
RigidSegmentAnnotator
)
ATOM_PER_MOL
(in
CHEM.Common.MolStdValue
)
action_saveState()
(in
VirtualSpaceSynthesisTreeWeb
)
allValues()
(in
SolubilityAnnotator
)
AtomBondCountAnnotator
(in
CHEM.Annotation.ChemicalAnnotators
)
action_searchByChemicalId()
(in
ChemicalDetailWeb
)
allValues()
(in
XLogPAnnotator
)
atomCount()
(in
SynthesisGenerator
)
action_searchBySmiles()
(in
ChemicalDetailWeb
)
allValues()
(in
ZapAnnotator
)
AtomCountExtractor
(in
CHEM.ML.features
)
action_selectReactant()
(in
PathwayWeb
)
allValues()
(in
ReactionStepIDAnnotator
)
AtomCountExtractor
(in
CHEM.ML.features.AtomCountExtractor
)
action_selectReagent()
(in
PathwayWeb
)
ALPHA
(in
CHEM.Common.Const
)
atomDistance()
(in
ContactHistogramKernel
)
action_submitSurvey()
(in
SurveyWeb
)
aMechanismExplorerWeb
(in
CHEM.Web.cgibin.reaction.MechanismExplorerWeb
)
atomDistance()
(in
ContactHistogramExtractor
)
action_summaryReport()
(in
VirtualSpaceSynthesisTreeWeb
)
amine2Pattern
(in
Lipinski
)
atomElectronAffinity()
(in
CHEM.Common.MolExt
)
action_uploadFiles()
(in
BaseWeb
)
amine2Search
(in
Lipinski
)
atomElectronegativity()
(in
CHEM.Common.MolExt
)
action_uploadFiles()
(in
BaseWeb
)
aminePattern
(in
Lipinski
)
atomHybridization()
(in
CHEM.Common.MolExt
)
ActivityPredictor
(in
CHEM.ML.nnRnn.NnRnn
)
amineSearch
(in
Lipinski
)
atomIonizationEnergy()
(in
CHEM.Common.MolExt
)
add()
(in
SearchSentence
)
aMoleculeView
(in
CHEM.Web.cgibin.tools.MoleculeView
)
atomIsChiral()
(in
CHEM.Common.MolExt
)
add()
(in
FeatureDictWriter
)
analyzeProductMixture()
(in
CHEM.CombiCDB.SynthesisUtil
)
atomOverlapsExist()
(in
CHEM.Structure.Struct3d.structUtils
)
add()
(in
FeatureDictWriter
)
analyzeSynthesis()
(in
ProductWeb
)
atomPairWeightDict
(in
ContactHistogramKernel
)
add()
(in
FeatureFileWriter
)
AnanProcess
(in
CHEM.DB.rdb.rdbprivatedb
)
atomsAltered()
(in
CHEM.Common.MolExt
)
add()
(in
BitBoundedSearch
)
annotatedChemicalMols()
(in
ChemicalDetail
)
AtomScreen
(in
CHEM.CombiCDB
)
add()
(in
TopHeap
)
annotateDict()
(in
BaseAnnotator
)
AtomScreen
(in
CHEM.CombiCDB.AtomScreen
)
add()
(in
TriangleSearch
)
annotateDict()
(in
BaseAnnotator
)
atomTupleWeightDict
(in
ContactHistogramExtractor
)
add_edge()
(in
UndirectedGraph
)
Annotation
(in
CHEM
)
attach_molecule()
(in
Predictor
)
add_vertex()
(in
UndirectedGraph
)
Annotation
(in
CHEM.DB.rdb.rdbsqlobject
)
attach_molecule()
(in
PredictorMol
)
addAnnotator()
(in
BasePopulator
)
ANNOTATION_COLS
(in
ChemicalDetail
)
autoCommit
(in
ChemicalMixIteratorPreparer
)
addDiscreteCriteria()
(in
ChemicalSearchModel
)
ANNOTATION_DELIMITER
(in
CHEM.Annotation.Const
)
autoCommit
(in
ChemicalMixIteratorPreparer
)
AddErrorMsg()
(in
FingerSearchWebService
)
ANNOTATION_DISPLAY_COLS
(in
ChemicalDetailWeb
)
autoCommit
(in
ChemicalMixIteratorPreparer
)
addFrom()
(in
SQLQuery
)
ANNOTATION_MOL_TAG
(in
RDFReader
)
autoCommit
(in
ReactionStepIteratorPreparer
)
addGroupBy()
(in
SQLQuery
)
ANNOTATION_NAME_TAG
(in
RDFReader
)
availableChemicalsByCanSmi
(in
VirtualSpaceSynthesisTreeWeb
)
addHandler()
(in
BaseWeb
)
ANNOTATION_SMI_TAG
(in
RDFReader
)
average()
(in
CHEM.DB.rdb.search.NameRxnSoapModule
)
addHandler()
(in
BaseWeb
)
ANNOTATION_VALUE_TAG
(in
RDFReader
)
AverageScoreAggregator
(in
CHEM.CombiCDB.SynthesisUtil
)
addHaving()
(in
SQLQuery
)
ANNOTATION_WRAP_CHAR
(in
RDFReader
)
AZIDE_ALKYNE_CYCLIZATION
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
addMockField()
(in
MockCGIFieldStorage
)
ANNOTATION_WRAP_COLUMN
(in
RDFReader
)
addMolecule()
(in
CHEM.CombiCDB.CanSmiUniqueSet
)
AnnotationAnnotators
(in
CHEM.Annotation
)
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