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C
CACHE_CODE
(in
CHEM.CombiCDB.Const
)
childGenerator()
(in
Tag
)
connection()
(in
CHEM.Common.DBUtil
)
CACHE_DIR
(in
CHEM.Web.cgibin.smi2gif
)
chooseTorsions()
(in
CHEM.Structure.Struct3d.structUtils
)
ConnectionManager
(in
CHEM.DB.rdb.rdbgateway
)
CACHE_SCALEBACK
(in
CHEM.Common.Smi2Depict
)
CIRCULAR
(in
CHEM.feature
)
connectRigidSegments()
(in
CHEM.Structure.Struct3d.structUtils
)
CACHE_SCALEBACK
(in
CHEM.Web.cgibin.smi2gif
)
CircularFactory
(in
CHEM.feature.CIRCULAR
)
connectToDB()
(in
CHEM.Structure.Struct3d.structUtils
)
cacheImage()
(in
CHEM.Web.cgibin.smi2gif
)
CLAISEN_CONDENSATION
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
consensus_and()
(in
BitBoundedSearch
)
calcStats()
(in
TimerTest
)
classify()
(in
AP_SRT
)
consensus_and()
(in
BitBoundedSearch
)
calcStats()
(in
TimerTest
)
clean()
(in
CHEM.DB.rdb.database
)
consensus_and()
(in
DictSearch
)
calculateWeight()
(in
MoleculeByWeight
)
cleanStatement()
(in
PQDatabase
)
consensus_and()
(in
FingerSearch
)
callBySmiles()
(in
CHEM.Annotation.ChemicalAnnotators
)
clearAnnotators()
(in
BasePopulator
)
consensus_and()
(in
SetSearch
)
callBySmiles()
(in
CHEM.Annotation.ReactionAnnotators
)
clearAtomStereo()
(in
CHEM.Common.MolExt
)
Const
(in
CHEM.Annotation
)
canonicalLabelAtoms()
(in
CHEM.Structure.Struct3d.structUtils
)
clearBondStereo()
(in
CHEM.Common.MolExt
)
Const
(in
CHEM.Annotation.test
)
canonicalLabelBonds()
(in
CHEM.Structure.Struct3d.structUtils
)
clearHandlers()
(in
BaseWeb
)
Const
(in
CHEM.CombiCDB
)
canonizeReactionMol()
(in
ReactionCanonizer
)
clearHandlers()
(in
BaseWeb
)
Const
(in
CHEM.CombiCDB.test
)
canonizeReactionSmiles()
(in
ReactionCanonizer
)
clearMechanismLabels()
(in
CHEM.CombiCDB.MechanismModel
)
Const
(in
CHEM.Common
)
CanSmilesAnnotator
(in
CHEM.Annotation.ChemicalAnnotators
)
clearMol()
(in
CHEM.Common.MolExt
)
Const
(in
CHEM.Common.test
)
CanSmiUniqueSet
(in
CHEM.CombiCDB
)
clearParameters()
(in
BaseScreen
)
Const
(in
CHEM.DB
)
CanSmiUniqueSetWeb
(in
CHEM.Web.cgibin
)
clearParameters()
(in
BaseScreen
)
Const
(in
CHEM.DB.test
)
CanSmiUniqueSetWeb
(in
CHEM.Web.cgibin.CanSmiUniqueSetWeb
)
clearProcessors()
(in
BaseDBPopulator
)
Const
(in
CHEM.Kernel
)
categoryTypesTable
(in
SourcererDatabase
)
clearProcessors()
(in
BaseDBPopulator
)
Const
(in
CHEM.Kernel.test
)
CategoryUpdater
(in
CHEM.DB.rdb.database
)
clearSentinelCharges()
(in
CHEM.CombiCDB.ReactionModel
)
Const
(in
CHEM.ML
)
CAUTION
(in
CHEM.CombiCDB.Const
)
clearSynthesisCache()
(in
SynthesisGenerator
)
Const
(in
CHEM.ML.Similarity
)
CData
(in
CHEM.DB.rdb.BeautifulSoup
)
close()
(in
RDFReader
)
Const
(in
CHEM.ML.Similarity.test
)
CDB_EMAIL
(in
CHEM.Web.cgibin.Env
)
close()
(in
Database
)
Const
(in
CHEM.ML.features
)
CDB_EMAIL
(in
CHEM.Web.cgibin.reaction.FeedbackWeb
)
close()
(in
PQDatabase
)
Const
(in
CHEM.ML.features.test
)
cgibin
(in
CHEM.Web
)
close()
(in
ConnectionManager
)
Const
(in
CHEM.ML.test
)
characterSet
(in
Sentence
)
ClusterReplicator
(in
CHEM.search.test
)
Const
(in
CHEM.Structure
)
chardet
(in
CHEM.DB.rdb.BeautifulSoup
)
cmdloop()
(in
FingerCmd
)
Const
(in
CHEM.Structure.test
)
CHARGE_CHARS
(in
CHEM.Common.Util
)
cMeasureArray
(in
CHEM.ML.featureAnalysis.FeatureAnalysis
)
Const
(in
CHEM.Web.cgibin
)
ChargeSeparationScore
(in
CHEM.CombiCDB.ReactionScore
)
CODE_COL
(in
CHEM.Common.Const
)
Const
(in
CHEM.Web.cgibin.tools
)
CHARSET_ALIASES
(in
UnicodeDammit
)
CODE_ORDER
(in
CHEM.Common.Const
)
Const
(in
CHEM.datatype.test
)
CHARSET_RE
(in
BeautifulSoup
)
Codec
Const
(in
CHEM.feature.test
)
check_power2()
(in
CHEM.feature.ENCODER
)
Codec
(in
CHEM.datatype.compress
)
Const
(in
CHEM.search.test
)
checkRDB()
(in
Controller
)
columnFromModelList()
(in
CHEM.Common.Model
)
Const
(in
CHEM.test
)
checkReactionFit()
(in
CHEM.CombiCDB.PolymerScreen
)
columnName()
(in
SingleAnnotator
)
ContactHistogramExtractor
(in
CHEM.ML.features
)
CHEM
columnName()
(in
SingleAnnotator
)
ContactHistogramExtractor
(in
CHEM.ML.features.ContactHistogramExtractor
)
CHEM_DIR
(in
CHEM.Common.SGEBatch
)
columnNamesFromCursor()
(in
CHEM.Common.DBUtil
)
ContactHistogramKernel
(in
CHEM.Kernel
)
CHEMAXON_MARVIN_URL
(in
CHEM.Common.Smi2Depict
)
CombiCDB
(in
CHEM
)
ContactHistogramKernel
(in
CHEM.Kernel.ContactHistogramKernel
)
CHEMAXON_MARVIN_URL
(in
CHEM.Web.cgibin.reaction.MechanismExplorerWeb
)
COMMAND
(in
CHEM.Common.SGEBatch
)
Controller
(in
CHEM.DB.rdb.rdbprivatedb
)
ChemaxonLogPAnnotator
(in
CHEM.Annotation.ChemicalAnnotators
)
Comment
(in
CHEM.DB.rdb.BeautifulSoup
)
convert
(in
CHEM.ML.nnRnn.inputFilesGeneration.createNnInputAll
)
chemaxonMarvinDepictImg()
(in
Smi2Depict
)
COMMENT_TAG
(in
CHEM.CombiCDB.Const
)
convert()
(in
PubChemConvert
)
chemaxonMarvinSketchApplet()
(in
Smi2Depict
)
COMMENT_TAG
(in
CHEM.Common.Const
)
convert_smi_mol_object()
(in
Predictor
)
chemaxonMarvinViewApplet()
(in
Smi2Depict
)
Common
(in
CHEM
)
convertUnique()
(in
CHEM.CombiCDB.CanSmiUniqueSet
)
ChemDBReactantPool
(in
CHEM.CombiCDB.SynthesisUtil
)
Common
(in
CHEM.ML.nnRnn
)
convertUpperTriToArray()
(in
CHEM.ML.featureAnalysis.FeatureAnalysis
)
ChemDBTestCase
(in
CHEM.Common.test.Util
)
compareCharFreq()
(in
Sentence
)
CorrectedFingerSearch
(in
CHEM.search.SEARCH
)
Chemical
(in
CHEM.DB.rdb.rdbsqlobject
)
compareProducts()
(in
CHEM.CombiCDB.ReactionClassifier
)
count
(in
CHEM.ML.predict.reduce_database
)
CHEMICAL_RANGE_OPTION_FORMAT
(in
CHEM.Web.cgibin.Options
)
comparisonMode
(in
ContactHistogramKernel
)
COUNT_LIST_KEY
(in
PatternCountScreen
)
ChemicalAnnotationIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
COMPLETE_STATUS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
countAtomCharges()
(in
CHEM.CombiCDB.ReactionModel
)
ChemicalAnnotators
(in
CHEM.Annotation
)
COMPLETE_STATUS
(in
CHEM.Web.cgibin.reaction.SurveyWeb
)
countIntermediates
(in
BaseReagent
)
ChemicalComponentIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
componentdict2
(in
CHEM.ML.featureAnalysis.grayscaleImshow
)
countNonNull()
(in
StatsUtil
)
ChemicalDetail
(in
CHEM.Common
)
ComponentType
(in
CHEM.DB.rdb.rdbsqlobject
)
countNonZeroWeight()
(in
StatsUtil
)
ChemicalDetail
(in
CHEM.Common.ChemicalDetail
)
ComponentTypeAnnotationIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
countPatternMatches()
(in
CHEM.CombiCDB.PatternMatchCounter
)
chemicalDetails()
(in
ChemicalDetail
)
ComponentTypeIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
countPatternMatchesByFilename()
(in
CHEM.CombiCDB.PatternMatchCounter
)
ChemicalDetailWeb
(in
CHEM.Web.cgibin
)
CompositeAnnotator
(in
CHEM.Annotation.BaseAnnotator
)
counts
(in
CHEM.Annotation.IsomerCountSummary
)
ChemicalDetailWeb
(in
CHEM.Web.cgibin.ChemicalDetailWeb
)
compositeProductSmilesSet
(in
TrackingDataModel
)
crawlerCollection
(in
CrawlerRegistry
)
ChemicalIDAnnotator
(in
CHEM.Annotation.ChemicalAnnotators
)
CompositeScore
(in
CHEM.CombiCDB.ReactionScore
)
CrawlerRegistry
(in
CHEM.DB.rdb.rdbregistry
)
ChemicalIteratorPreparer
(in
CHEM.DB.DBPopulator
)
compress
(in
CHEM.ML.nnRnn.inputFilesGeneration.compressFingerprints
)
create()
(in
SearchPickler
)
ChemicalIteratorPreparer
(in
CHEM.DB.DBPopulator2
)
compress
(in
CHEM.datatype
)
create_test()
(in
Predictor
)
ChemicalIteratorPreparer
(in
CHEM.DB.DBPopulator3
)
compressFingerprints
(in
CHEM.ML.nnRnn.inputFilesGeneration
)
create_test()
(in
PredictorMol
)
ChemicalMixIteratorPreparer
(in
CHEM.DB.DBPopulator
)
computingCorrSimiMatrix()
(in
SimiMeasureAnalysis
)
createFinger()
(in
FingerSearchWebService
)
ChemicalMixIteratorPreparer
(in
CHEM.DB.DBPopulator2
)
computingSimiMeasureMatrix()
(in
SimiMeasureAnalysis
)
createNnInput
(in
CHEM.ML.nnRnn.inputFilesGeneration
)
ChemicalMixIteratorPreparer
(in
CHEM.DB.DBPopulator3
)
computingTaniSimiMatrix()
(in
SimiMeasureAnalysis
)
createNnInputAll
(in
CHEM.ML.nnRnn.inputFilesGeneration
)
chemicalSearch
(in
ChemDBReactantPool
)
Configuration
(in
CHEM.DB.rdb.rdbglobals
)
createNonIsoSmi()
(in
CHEM.CombiCDB.MechanismModel
)
ChemicalSearch
(in
CHEM.Common
)
conn
(in
CHEM.Annotation.IsomerCountSummary
)
createRandomFile()
(in
SearchPickler
)
ChemicalSearch
(in
CHEM.Common.ChemicalSearch
)
connect()
(in
Database
)
createStandardMol()
(in
CHEM.Common.MolExt
)
ChemicalSearchModel
(in
CHEM.Common.Model
)
connect()
(in
PQDatabase
)
createTuple()
(in
ContactHistogramExtractor
)
ChemicalSearchWeb
(in
CHEM.Web.cgibin
)
connect()
(in
ConnectionManager
)
cursor
(in
CHEM.Annotation.IsomerCountSummary
)
ChemicalSearchWeb
(in
CHEM.Web.cgibin.ChemicalSearchWeb
)
CONNECTED
(in
ConnectionManager
)
CYCLOADDITION_4_2
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
chemicalTextSearch()
(in
ChemicalSearch
)
connection
(in
CHEM.DB.rdb.rdbgateway
)
childData
(in
RowItemModel
)
connection
(in
CHEM.DB.rdb.search.NameRxnPatternMatchingDB
)
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