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R
randc
(in
CHEM.ML.featureAnalysis.FeatureAnalysis
)
ReactionStepIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
response()
(in
CanSmiUniqueSetWeb
)
RandomDict()
(in
CHEM.datatype.compress
)
reactionSteps
(in
PathwayWeb
)
response()
(in
IsomerDownloadWeb
)
RandomOrderAtoms
(in
CHEM.Kernel
)
reactionSteps
(in
ProductWeb
)
response()
(in
MSFragment
)
RandomOrderAtoms
(in
CHEM.Kernel.RandomOrderAtoms
)
reactionStepsByTargetSmi
(in
VirtualSpaceSynthesisTreeWeb
)
response()
(in
PolymerScreenWeb
)
randomOrderAtoms
(in
VariantAggregateSpectrumKernel
)
reactionStepStr()
(in
CHEM.CombiCDB.ReactionModel
)
response()
(in
Smi2DepictWeb
)
RandomReorderBits
(in
CHEM.datatype.compress
)
ReactionStepViewWeb
(in
CHEM.Web.cgibin.reactdb
)
response()
(in
ProblemRecordDetailWeb
)
RandomSet()
(in
CHEM.datatype.compress
)
ReactionStepViewWeb
(in
CHEM.Web.cgibin.reactdb.ReactionStepViewWeb
)
response()
(in
ProblemRecordWeb
)
randomSource
(in
RandomOrderAtoms
)
ReactionStepViewWeb
(in
CHEM.Web.cgibin.reaction
)
response()
(in
ReactionTutorialSetupWeb
)
randSel()
(in
CHEM.Structure.Struct3d.structUtils
)
ReactionStepViewWeb
(in
CHEM.Web.cgibin.reaction.ReactionStepViewWeb
)
response()
(in
SurveyWeb
)
rdb
(in
CHEM.DB
)
reactionSynthesisIDs
(in
SynthesisRequestModel
)
response()
(in
UrlForward
)
rdbcrawler
(in
CHEM.DB.rdb
)
ReactionSynthesisIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
ResultSet
(in
CHEM.DB.rdb.BeautifulSoup
)
rdbgateway
(in
CHEM.DB.rdb
)
ReactionTutorialSetupWeb
(in
CHEM.Web.cgibin.reaction
)
ResultsFormatter
(in
CHEM.Common
)
rdbglobals
(in
CHEM.DB.rdb
)
ReactionTutorialSetupWeb
(in
CHEM.Web.cgibin.reaction.ReactionTutorialSetupWeb
)
ResultsFormatter
(in
CHEM.Common.ResultsFormatter
)
rdbinsert
(in
CHEM.DB.rdb
)
ReactionTutorialWeb
(in
CHEM.Web.cgibin.reaction
)
retrievalFallbackToCategorySubsets
(in
SynthesisRequestModel
)
rdbpopulator
(in
CHEM.DB.rdb
)
ReactionTutorialWeb
(in
CHEM.Web.cgibin.reaction.ReactionTutorialWeb
)
retrieve()
(in
NearestNeighbors
)
rdbprivatedb
(in
CHEM.DB.rdb
)
readConstraintFile()
(in
CHEM.Structure.Struct3d.spe
)
retrieveDBReagentNames()
(in
CHEM.DB.rdb.search.NameRxnPatternMatchingDB
)
rdbregistry
(in
CHEM.DB.rdb
)
readData()
(in
CHEM.ML.nnRnn.NnRnn
)
retrieveIsomersBySmiles()
(in
ChemicalDetail
)
rdbsqlobject
(in
CHEM.DB.rdb
)
readFeatureFile()
(in
CHEM.feature.test.FeatureReader_rb
)
retrieveRawDBReagentNames()
(in
CHEM.DB.rdb.search.NameRxnPatternMatchingDB
)
RDFReader
(in
CHEM.CombiCDB.ReactionFormatter
)
readFeatureValueDict()
(in
FeatureRegression
)
retrieveSegmentFromDB()
(in
CHEM.Structure.Struct3d.structUtils
)
REACT
(in
CHEM.feature
)
readFingers()
(in
NearestNeighbors
)
retrieveSyntheses()
(in
SynthesisGenerator
)
REACTANT_HTML_DELIM
(in
CHEM.Web.cgibin.reaction.PathwayWeb
)
readidxs()
(in
ReorderBits
)
retrieveTorsionsFromDB()
(in
CHEM.Structure.Struct3d.structUtils
)
REACTANT_LIST_LABEL
(in
CHEM.CombiCDB.Const
)
ReadPickledObject()
(in
CHEM.search.SEARCHcluster
)
retro()
(in
BaseReagent
)
REACTANT_PLACEHOLDER
(in
CHEM.Web.cgibin.reaction.PathwayWeb
)
readSMARTSFile()
(in
CHEM.CombiCDB.PatternMatchCounter
)
retro()
(in
SMIRKSReagent
)
REACTANT_PRODUCT_COUNT_LINE
(in
RDFReader
)
readSMIRKSFile()
(in
CHEM.CombiCDB.PolymerScreen
)
RETRO_ONLY
(in
CHEM.CombiCDB.Const
)
reactantPool
(in
RetroSynthesis
)
readSMIRKSFile()
(in
ReactionProcessor
)
retroProductSelector
(in
RetroSynthesis
)
reactantPool
(in
GreedyRetroProductSelector
)
REAGENT
(in
CHEM.CombiCDB.ReactionModel
)
retroReactantsReproduced
(in
SupplementalDataModel
)
reactantPool
(in
SimpleReactantPool
)
Reagent
(in
CHEM.DB.rdb.rdbsqlobject
)
retroReady
(in
ReagentSearchModel
)
REACTANTS
(in
CHEM.CombiCDB.ReactionModel
)
ReagentAnnotation
(in
CHEM.DB.rdb.rdbsqlobject
)
retroReagentList
(in
RetroSynthesis
)
reactantSmilesDict
(in
TrackingDataModel
)
ReagentIdentifiers
(in
CHEM.CombiCDB.test
)
retroReagentsById
(in
MechanismExample
)
ReactantsWeb
(in
CHEM.Web.cgibin.reaction
)
reagentIDs
(in
ReagentSearchModel
)
retroReagentsById
(in
VirtualSpaceQueryWeb
)
ReactantsWeb
(in
CHEM.Web.cgibin.reaction.ReactantsWeb
)
reagentList
(in
RetroSynthesis
)
RetroSynthesis
(in
CHEM.CombiCDB
)
reactdb
(in
CHEM.Web.cgibin
)
reagents
(in
MechanismExample
)
RetroSynthesis
(in
CHEM.CombiCDB.RetroSynthesis
)
ReactDBPopulator
(in
CHEM.DB
)
reagents
(in
VirtualSpaceBuildingBlocksWeb
)
retroValidationProductsByPrecursorSmi
(in
SupplementalDataModel
)
ReactDBPopulator
(in
CHEM.DB.ReactDBPopulator
)
reagents
(in
VirtualSpaceQueryWeb
)
returnCount
(in
GreedyRetroProductSelector
)
ReactDBToolkits
(in
CHEM.Web.cgibin.reactdb
)
reagentsById
(in
MechanismExample
)
RigidSegmentAnnotator
(in
CHEM.Annotation.ChemicalAnnotators
)
ReactDBToolkits
(in
CHEM.Web.cgibin.reactdb.ReactDBToolkits
)
reagentsById
(in
PathwayWeb
)
RING_PENALTY_TABLE
(in
RingStrainScore
)
reaction
(in
CHEM.Web.cgibin
)
reagentsById
(in
VirtualSpaceBuildingBlocksWeb
)
RingChangeScreen
(in
CHEM.CombiCDB.ReactionScreen
)
REACTION_BEGIN_TAG
(in
RDFReader
)
reagentsById
(in
VirtualSpaceQueryWeb
)
RingExtractor
(in
CHEM.ML.features
)
REACTION_COMPONENT_DELIM
(in
CHEM.Common.Const
)
reagentsById
(in
VirtualSpaceSynthesisTreeWeb
)
RingExtractor
(in
CHEM.ML.features.RingExtractor
)
REACTION_DELIM
(in
CHEM.CombiCDB.Const
)
ReagentSearchModel
(in
CHEM.CombiCDB.ReactionModel
)
RingStrainScore
(in
CHEM.CombiCDB.ReactionScore
)
REACTION_FOOTER_LINK_HREF
(in
CHEM.Web.cgibin.Links
)
ReagentsWeb
(in
CHEM.Web.cgibin.reaction
)
rmsd()
(in
StatsUtil
)
REACTION_FOOTER_LINK_TEXT
(in
CHEM.Web.cgibin.Links
)
ReagentsWeb
(in
CHEM.Web.cgibin.reaction.ReagentsWeb
)
RMSDvsCorina
(in
CHEM.Structure
)
REACTION_FOOTER_LINKS
(in
CHEM.Web.cgibin.Links
)
rearrangeOrbitalElectrons()
(in
CHEM.Common.MolExt
)
RMSDvsCorina
(in
CHEM.Structure.RMSDvsCorina
)
REACTION_HEADER_LINK_HREF
(in
CHEM.Web.cgibin.Links
)
rearrangeOrbitalElectronsAllowDoubleCharges()
(in
CHEM.Common.MolExt
)
rmsdW()
(in
StatsUtil
)
REACTION_HEADER_LINK_TEXT
(in
CHEM.Web.cgibin.Links
)
RecordUpdate
(in
CHEM.DB.BaseDBPopulator
)
rnn
(in
CHEM.ML.nnRnn.NnRnnAll
)
REACTION_HEADER_LINKS
(in
CHEM.Web.cgibin.Links
)
RECURSION_DEPTH
(in
CHEM.CombiCDB.MechanismPredictor
)
ROBINSON_ANNULATION
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
REACTION_LABEL
(in
CHEM.CombiCDB.Const
)
recursiveChildGenerator()
(in
Tag
)
RobustHTMLParser
(in
CHEM.DB.rdb.BeautifulSoup
)
REACTION_LABEL_END
(in
CHEM.CombiCDB.Const
)
recursiveReactantSmiDict
(in
TrackingDataModel
)
RobustInsanelyWackAssHTMLParser
(in
CHEM.DB.rdb.BeautifulSoup
)
REACTION_NAV_LINK_HREF
(in
CHEM.Web.cgibin.Links
)
reduce_database
(in
CHEM.ML.predict
)
RobustWackAssHTMLParser
(in
CHEM.DB.rdb.BeautifulSoup
)
REACTION_NAV_LINK_TEXT
(in
CHEM.Web.cgibin.Links
)
REDUCTION_CLEMMENSEN
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
RobustXMLParser
(in
CHEM.DB.rdb.BeautifulSoup
)
REACTION_NAV_LINKS
(in
CHEM.Web.cgibin.Links
)
REDUCTION_DIBALH
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
ROOM_TEMPERATURE
(in
CHEM.Common.MolStdValue
)
REACTION_PROFILE_DELIM
(in
CHEM.CombiCDB.Const
)
REDUCTION_LIALH4
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
ROOT_TAG_NAME
(in
BeautifulStoneSoup
)
reaction_synthesis_id
(in
ReactionSynthesisIteratorPreparer
)
REDUCTION_NABH4
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
ROW_TEMPLATE
(in
CHEM.Web.cgibin.tools.MolInfoWeb
)
ReactionAnnotators
(in
CHEM.Annotation
)
REDUCTION_WOLF_KISHNER
(in
CHEM.CombiCDB.test.ReagentIdentifiers
)
RowInserter
(in
CHEM.DB.BaseDBPopulator
)
reactionCanonizer
(in
ReactionSmilesAnnotator
)
registerCrawler()
(in
CrawlerRegistry
)
RowItemModel
(in
CHEM.Common.Model
)
ReactionCanonizer
(in
CHEM.CombiCDB.ReactionFormatter
)
registerParser()
(in
ParserRegistry
)
ruler
(in
FingerCmd
)
reactionCategoryIDs
(in
ReagentSearchModel
)
registerPopulator()
(in
BaseDBPopulator
)
run()
(in
AnnotationSummarizer
)
reactionCategoryIDs
(in
SynthesisRequestModel
)
regression()
(in
FeatureRegression
)
run()
(in
BasePopulator
)
reactionCategoryIDsStr()
(in
SynthesisRequestModel
)
regressionByFilenames()
(in
FeatureRegression
)
run()
(in
BaseDBPopulator
)
ReactionClassifier
(in
CHEM.CombiCDB
)
release()
(in
Lockable
)
run()
(in
DBPopulator
)
ReactionClassifierReport
(in
CHEM.CombiCDB
)
release()
(in
Lockable
)
run()
(in
DBPopulator
)
reactionDatabaseistream()
(in
CHEM.CombiCDB.ReactionClassifier
)
removeInherentProducts
(in
BaseReagent
)
run()
(in
DBPopulator
)
ReactionDrillWeb
(in
CHEM.Web.cgibin.reaction
)
removeSim
(in
CHEM.ML.nnRnn.nearestNeighbors.extendNnOutputs
)
run()
(in
ReactDBPopulator
)
ReactionDrillWeb
(in
CHEM.Web.cgibin.reaction.ReactionDrillWeb
)
removeSim
(in
CHEM.ML.nnRnn.nearestNeighbors
)
run()
(in
BaseCrawler
)
ReactionFileIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
renderContents()
(in
Tag
)
run()
(in
Process
)
ReactionFormatter
(in
CHEM.CombiCDB
)
renderReactant()
(in
PathwayWeb
)
run()
(in
RMSDvsCorina
)
ReactionMatcher
(in
CHEM.CombiCDB.ReactionClassifier
)
renderReactantList()
(in
ReactantsWeb
)
run()
(in
TimerTest
)
ReactionModel
(in
CHEM.CombiCDB
)
REORDER
(in
CHEM.feature
)
run()
(in
BaseSearchTest
)
reactionmolistream()
(in
CHEM.CombiCDB.ReactionFormatter
)
ReorderBits
(in
CHEM.datatype.compress
)
run()
(in
TimerTest
)
reactionPatternistream()
(in
CHEM.CombiCDB.ReactionClassifier
)
Reorderer
(in
CHEM.feature.REORDER
)
run_computation()
(in
DelauneySpectrum
)
ReactionPredictor
(in
CHEM.CombiCDB
)
replaceWhitespace()
(in
BaseWeb
)
run_prediction()
(in
Predictor
)
ReactionPredictor
(in
CHEM.CombiCDB.ReactionPredictor
)
replaceWhitespace()
(in
BaseWeb
)
run_prediction()
(in
PredictorMol
)
reactionProcessor
(in
SMIRKSReagent
)
replaceWith()
(in
PageElement
)
runByFilename()
(in
ReactionCanonizer
)
ReactionProcessor
(in
CHEM.CombiCDB
)
replicate()
(in
CHEM.search.test.ClusterReplicator
)
runByMolStream()
(in
ReactionCanonizer
)
ReactionProcessor
(in
CHEM.CombiCDB.ReactionProcessor
)
REPRODUCED_VERIFY_COL
(in
CHEM.CombiCDB.test.TestRetroReagents
)
runByReaction()
(in
ReactionMatcher
)
ReactionProcessorWeb
(in
CHEM.Web.cgibin.reaction
)
req
(in
BaseWeb
)
runByReagent()
(in
ReactionMatcher
)
ReactionProcessorWeb
(in
CHEM.Web.cgibin.reaction.ReactionProcessorWeb
)
requestData
(in
BaseWeb
)
runCorina()
(in
RMSDvsCorina
)
ReactionProfile
(in
CHEM.DB.rdb.rdbsqlobject
)
requestIndex
(in
SynthesisPreparerWeb
)
runDBScript()
(in
CHEM.Common.DBUtil
)
ReactionProfileBrowse
(in
CHEM.Web.cgibin.reactdb
)
REQUIRED_ATOMIC_NUMS
(in
CHEM.CombiCDB.Const
)
RUNNER_VERBOSITY
(in
CHEM.Annotation.test.Const
)
ReactionProfileBrowse
(in
CHEM.Web.cgibin.reactdb.ReactionProfileBrowse
)
REQUIRED_DATES
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.CombiCDB.test.Const
)
reactionProfileList
(in
SMIRKSReagent
)
REQUIRED_DATES_BY_CLASS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.Common.test.Const
)
reactionProfileSupportsMechanism()
(in
CHEM.CombiCDB.MechanismModel
)
REQUIRED_PER_CHAPTER
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.DB.test.Const
)
ReactionProfileViewWeb
(in
CHEM.Web.cgibin.reactdb
)
REQUIRED_PROBLEM_CLASS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.Kernel.test.Const
)
ReactionProfileViewWeb
(in
CHEM.Web.cgibin.reactdb.ReactionProfileViewWeb
)
REQUIRED_PROBLEM_CLASS_BY_CLASS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.ML.Similarity.test.Const
)
reactionReliabilityStats()
(in
VirtualSpaceQueryWeb
)
REQUIRED_REACTION_CATEGORY_IDS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.ML.features.test.Const
)
ReactionScore
(in
CHEM.CombiCDB
)
REQUIRED_REACTION_CATEGORY_IDS_BY_CLASS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.ML.test.Const
)
ReactionScreen
(in
CHEM.CombiCDB
)
REQUIRED_TOTALS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.Structure.test.Const
)
ReactionSmilesAnnotator
(in
CHEM.Annotation.ReactionAnnotators
)
REQUIRED_TOTALS_BY_CLASS
(in
CHEM.Web.cgibin.reaction.ProgressChecklistWeb
)
RUNNER_VERBOSITY
(in
CHEM.Structure.test.TestStructureDeviationScore
)
ReactionStep
(in
CHEM.CombiCDB.ReactionModel
)
requiredAtomicNums
(in
SMIRKSReagent
)
RUNNER_VERBOSITY
(in
CHEM.datatype.test.Const
)
ReactionStep
(in
CHEM.DB.rdb.rdbsqlobject
)
reset()
(in
BeautifulStoneSoup
)
RUNNER_VERBOSITY
(in
CHEM.datatype.test.TestCompress
)
ReactionStepAnnotation
(in
CHEM.DB.rdb.rdbsqlobject
)
RESET_NESTING_TAGS
(in
BeautifulSoup
)
RUNNER_VERBOSITY
(in
CHEM.feature.test.Const
)
ReactionStepAnnotationIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
RESET_NESTING_TAGS
(in
BeautifulStoneSoup
)
RUNNER_VERBOSITY
(in
CHEM.search.test.Const
)
ReactionStepBrowse
(in
CHEM.Web.cgibin.reactdb
)
RESET_NESTING_TAGS
(in
MinimalSoup
)
RUNNER_VERBOSITY
(in
CHEM.test.Const
)
ReactionStepBrowse
(in
CHEM.Web.cgibin.reactdb.ReactionStepBrowse
)
resize()
(in
LimitCache
)
runScreen()
(in
BaseScreen
)
ReactionStepChemical
(in
CHEM.DB.rdb.rdbsqlobject
)
RESONANCE_BONUS
(in
FreeEnergy
)
runScreen()
(in
BaseScreen
)
ReactionStepChemicalAnnotationIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
resonanceStructureIter()
(in
CHEM.Common.MolExt
)
runScreenByFilename()
(in
BaseScreen
)
ReactionStepChemicalComponentIteratorPreparer
(in
CHEM.DB.ReactDBPopulator
)
response()
(in
AdminIndex
)
runScreenByFilename()
(in
BaseScreen
)
ReactionStepDetailsWeb
(in
CHEM.Web.cgibin.reaction
)
response()
(in
BabelWeb
)
runScript
(in
CHEM.ML.nnRnn.inputFilesGeneration.compressFingerprints
)
ReactionStepDetailsWeb
(in
CHEM.Web.cgibin.reaction.ReactionStepDetailsWeb
)
response()
(in
BaseWeb
)
runScript
(in
CHEM.ML.nnRnn.inputFilesGeneration.createNnInputAll
)
ReactionStepIDAnnotator
(in
CHEM.Annotation.ReactionAnnotators
)
response()
(in
BaseWeb
)
runUpdate()
(in
CHEM.DB.rdb.database
)
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