papers and reports by year
2009
H. Pirsiavash, D. Ramanan, C. Fowlkes. "Bilinear classifiers for visual recognition", NIPS (Dec. 2009).C. Desai, D. Ramanan, C. Fowlkes. "Discriminative models for multi-class object layout", ICCV Kyoto, Japan, (Sept. 2009). [pdf]
P. Arbelaez, M. Maire, C. Fowlkes and J. Malik. "From Contours to Regions: An Empirical Evaluation", CVPR Miami Beach, FL, (June 2009). [pdf]
2008
M. Maire, P. Arbelaez, C. Fowlkes and J. Malik. "Using Contours to Detect and Localize Junctions in Natural Images", CVPR Anchorage, AK, (June 2008). [pdf]O. Rübel, G. Weber, M-Y Huang, E. Bethel, M. Biggin, C. Fowlkes C. Leungo Hendriks, S. Keränen, M. Eisen, D. Knowles, J. Malik, H. Hagen, B. Hamann, "Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data" IEEE Transactions on Computational Biology and Bioinformatics, to appear, [pdf]
C. Fowlkes, C. Luengo Hendriks, S. Keränen, G. Weber, O. Rübel,
M-Y Huang, S. Chatoor, L. Simirenko, A. DePace C. Henriquez, A. Beaton, R.
Weiszmann, S. Celniker, B. Hamann, D. Knowles, M. Biggin, M. Eisen, J. Malik.
"Constructing a quantitative spatio-temporal atlas of gene expression in
the Drosophila blastoderm", Cell, 133(2), p. 364-374, 2008.
[pdf]
[supplement]
X. Ren, C. Fowlkes, J. Malik.
"Learning Probabilistic Models for Contour Completion in Natural Images",
IJCV (2008), 77:47-63.
[pdf]
2007
G. Weber, O. Rübel, M-Y Huang, A. DePace, C. Fowlkes, S. Keränen, C. Luengo Hendriks, H. Hagen, D. Knowles, J. Malik, M. Biggin, and B. Hamann "Visual Exploration of Three-dimensional Gene Expression Using Physical Views and Linked Abstract Views", IEEE Transactions on Computational Biology and Bioinformatics, to appear, [pdf]
C. Fowlkes, D. Martin, J. Malik.
"Local Figure/Ground Cues are Valid for Natural Images"
Journal of Vision, 7(8):2, 1-9.
[pdf]
[dataset]
2006
C. Luengo-Hendriks, S. Keränen, C. Fowlkes, L. Simirenko, G. Weber, C. Henriquez, D. Kaszuba, B. Hamann, M. Eisen, J. Malik, D. Sudar, M. Biggin D. Knowles, "3D Morphology and Gene Expression in the Drosophila Blastoderm at Cellular Resolution I: Data Acquisition Pipeline", Genome Biology 2006, 7:R123 , [pdf]S. Keränen, C. Fowlkes, C. Luengo Hendriks, D. Sudar, D. Knowles, J. Malik, M. Biggin, "3D Morphology and Gene Expression in the Drosophila Blastoderm at Cellular Resolution II: Dynamics", Genome Biology 2006, 7:R124, [pdf]
C. Fowlkes, J. Malik. "Inferring nuclear movements from fixed material", Technical Report EECS-2006-142, EECS Department, University of California, Berkeley, (November 2006). [pdf]
X. Ren, C. Fowlkes, J. Malik. "Figure/Ground Assignment in Natural Images", ECCV, Graz, Austria, (May 2006). [pdf]
O. Rübel, G. Weber, S. Keränen, C. Fowlkes, C. Luengo Hendriks, N. Shah, M. Biggin, H. Hagen, D. Knowles, J. Malik, D. Sudar and B. Hamann. "PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates", EuroVIS, Lisbon, Portugal, (May 2006). [pdf]
2005
X. Ren, C. Fowlkes, J. Malik. "Cue Integration for Figure/Ground Labeling", NIPS, Vancouver, Canada, (Dec. 2005). [pdf]X. Ren, C. Fowlkes, J. Malik. "Scale-Invariant Contour Completion using Conditional Random Fields", ICCV, Beijing, China, (Oct. 2005). [pdf]
C. Fowlkes, C. Luengo Hendriks, S. Keränen, M. Biggin, D. Knowles, D. Sudar, J. Malik. "Registering Drosophila Embryos at Cellular Resolution to Build a Quantitative 3D Atlas of Gene Expression Patterns and Morphology", CSB 2005 Workshop on BioImage Data Minning and Informatics, Palo Alto, CA, (Aug. 2005). [pdf]
X. Ren, C. Fowlkes, J. Malik. "Mid-level Cues Improve Boundary Detection", Technical Report CSD-05-1382, Division of Computer Science, University of California, Berkeley, (March 2005). [pdf]
2004
C. Fowlkes "A Note on Planar Factor Graphs", (Oct. 2004). [pdf]C. Fowlkes, J. Malik. "How Much Does Globalization Help Segmentation?", Technical Report CSD-04-1340, Division of Computer Science, University of California, Berkeley, (July 2004). [pdf]
C. Fowlkes "Surveying Shape Spaces", survey article for Alan Weinstein's course on Reimannian Geometry [pdf]
D. Martin, C. Fowlkes, J. Malik. "Learning to Detect Natural Image Boundaries Using Local Brightness, Color and Texture Cues", TPAMI 26 (5) p.530-549 [pdf]
C. Fowlkes, S. Belongie, F. Chung, J. Malik. "Spectral Grouping Using The Nyström Method", TPAMI 26 (2) p.214-225 [pdf]
2003
C. Fowlkes, D. Martin, J. Malik. "Learning Affinity Functions for Image Segmentation: Combining Patch-based and Gradient-based Approaches", CVPR, Madison, WI, (June 2003). [pdf]2002
D. Martin, C. Fowlkes, J. Malik. "Learning to Detect Natural Image Boundaries Using Brightness and Texture", NIPS , Vancouver, (Dec 2002). [pdf]S. Belongie, C. Fowlkes, F. Chung, J. Malik. "Spectral Partitioning with Indefinite Kernels using the Nyström Extension", ECCV , Copenhagen, (May 2002). [pdf]
C. Fowlkes, Q. Shan, S. Belongie, J. Malik. "Extracting Global Structure from Gene Expression Profiles", in Methods of Microarray Data Analysis II, S. M. Lin and K. F. Johnson, editors. Kluwer Academic Publishers, 2002. [pdf]
2001 and before
C. Fowlkes, S. Belongie, J. Malik. "Efficient Spatiotemporal Grouping Using the Nyström Method", CVPR , Hawaii, (Dec. 2001). [pdf]D. Martin, C. Fowlkes, D. Tal, J. Malik. "A Database of Human Segmented Natural Images and its Application to Evaluating Segmentation Algorithms and Measuring Ecological Statistics", ICCV, Vancouver, (July 2001). [pdf]
M.C. Burl, C. Fowlkes, J. Roden, "Mining for Image Content", SCI-ISAS '99 Session on Intelligent Data Mining and Knowledge Discovery, Orlando, FL, (Aug 1999) [pdf]
M.C. Burl, C. Fowlkes, J. Roden, A. Stechert, and S. Muukhtar, "Diamond Eye: A distributed Architecture for Image Data Mining", SPIE Conference on Data Minning and Knowledge Discovery, Orlando, FL (Apr 1999) [pdf]
C. W. Fowlkes and C. C. Fowlkes "Passive Solar Contributions to Residential Ventilation", Conservation in Buildings: Northwest Perspective, Butte, MT (May 1985) [pdf]
erdös = 2