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charless c. fowlkes

assistant professor
computer science
uc irvine

fowlkes@ics.uci
4076 dbh
949.824.6945

uci : cs : vision group

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papers and reports


C. Fowlkes, C. Luengo Hendriks, S. Keränen, G. Weber, O. Rübel, M-Y Huang, S. Chatoor, L. Simirenko, A. DePace C. Henriquez, A. Beaton, R. Weiszmann, S. Celniker, B. Hamann, D. Knowles, M. Biggin, M. Eisen, J. Malik. "Constructing a quantitative spatio-temporal atlas of gene expression in the Drosophila blastoderm", to appear, Cell

X. Ren, C. Fowlkes, J. Malik. "Learning Probabilistic Models for Contour Completion in Natural Images", IJCV (2008), 77:47-63. [pdf]

G. Weber, O. Rübel, M-Y Huang, A. DePace, C. Fowlkes, S. Keränen, C. Luengo Hendriks, H. Hagen, D. Knowles, J. Malik, M. Biggin, and B. Hamann "Visual Exploration of Three-dimensional Gene Expression Using Physical Views and Linked Abstract Views", IEEE Transactions on Computational Biology and Bioinformatics, to appear, [pdf]

C. Fowlkes, D. Martin, J. Malik. "Local Figure/Ground Cues are Valid for Natural Images" Journal of Vision, 7(8):2, 1-9. [pdf] [dataset]

C. Luengo-Hendriks, S. Keränen, C. Fowlkes, L. Simirenko, G. Weber, C. Henriquez, D. Kaszuba, B. Hamann, M. Eisen, J. Malik, D. Sudar, M. Biggin D. Knowles, "3D Morphology and Gene Expression in the Drosophila Blastoderm at Cellular Resolution I: Data Acquisition Pipeline", Genome Biology, [pdf]

S. Keränen, C. Fowlkes, C. Luengo Hendriks, D. Sudar, D. Knowles, J. Malik, M. Biggin, "3D Morphology and Gene Expression in the Drosophila Blastoderm at Cellular Resolution II: Dynamics", Genome Biology, [pdf]

C. Fowlkes, J. Malik. "Inferring nuclear movements from fixed material", Technical Report EECS-2006-142, EECS Department, University of California, Berkeley, (November 2006). [pdf]

X. Ren, C. Fowlkes, J. Malik. "Figure/Ground Assignment in Natural Images", ECCV, Graz, Austria, (May 2006). [pdf]

O. Rübel, G. Weber, S. Keränen, C. Fowlkes, C. Luengo Hendriks, N. Shah, M. Biggin, H. Hagen, D. Knowles, J. Malik, D. Sudar and B. Hamann. "PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates", EuroVIS, Lisbon, Portugal, (May 2006). [pdf]

X. Ren, C. Fowlkes, J. Malik. "Cue Integration for Figure/Ground Labeling", NIPS, Vancouver, Canada, (Dec. 2005). [pdf]

X. Ren, C. Fowlkes, J. Malik. "Scale-Invariant Contour Completion using Conditional Random Fields", ICCV, Beijing, China, (Oct. 2005). [pdf]

C. Fowlkes, C. Luengo Hendriks, S. Keränen, M. Biggin, D. Knowles, D. Sudar, J. Malik. "Registering Drosophila Embryos at Cellular Resolution to Build a Quantitative 3D Atlas of Gene Expression Patterns and Morphology", CSB 2005 Workshop on BioImage Data Minning and Informatics, Palo Alto, CA, (Aug. 2005). [pdf]

X. Ren, C. Fowlkes, J. Malik. "Mid-level Cues Improve Boundary Detection", Technical Report CSD-05-1382, Division of Computer Science, University of California, Berkeley, (March 2005). [pdf]

C. Fowlkes "A Note on Planar Factor Graphs", (Oct. 2004). [pdf]

C. Fowlkes, J. Malik. "How Much Does Globalization Help Segmentation?", Technical Report CSD-04-1340, Division of Computer Science, University of California, Berkeley, (July 2004). [pdf]

C. Fowlkes "Surveying Shape Spaces", survey article for Alan Weinstein's course on Reimannian Geometry [pdf]

D. Martin, C. Fowlkes, J. Malik. "Learning to Detect Natural Image Boundaries Using Local Brightness, Color and Texture Cues", TPAMI 26 (5) p.530-549 [pdf]

C. Fowlkes, S. Belongie, F. Chung, J. Malik. "Spectral Grouping Using The Nyström Method", TPAMI 26 (2) p.214-225 [pdf]

C. Fowlkes, D. Martin, J. Malik. "Learning Affinity Functions for Image Segmentation: Combining Patch-based and Gradient-based Approaches", CVPR, Madison, WI, (June 2003). [pdf]

D. Martin, C. Fowlkes, J. Malik. "Learning to Detect Natural Image Boundaries Using Brightness and Texture", NIPS , Vancouver, (Dec 2002). [pdf]

S. Belongie, C. Fowlkes, F. Chung, J. Malik. "Spectral Partitioning with Indefinite Kernels using the Nyström Extension", ECCV , Copenhagen, (May 2002). [pdf]

C. Fowlkes, Q. Shan, S. Belongie, J. Malik. "Extracting Global Structure from Gene Expression Profiles", in Methods of Microarray Data Analysis II, S. M. Lin and K. F. Johnson, editors. Kluwer Academic Publishers, 2002. [pdf]

C. Fowlkes, S. Belongie, J. Malik. "Efficient Spatiotemporal Grouping Using the Nyström Method", CVPR , Hawaii, (Dec. 2001). [pdf]

D. Martin, C. Fowlkes, D. Tal, J. Malik. "A Database of Human Segmented Natural Images and its Application to Evaluating Segmentation Algorithms and Measuring Ecological Statistics", ICCV, Vancouver, (July 2001). [pdf]

M.C. Burl, C. Fowlkes, J. Roden, "Mining for Image Content", SCI-ISAS '99 Session on Intelligent Data Mining and Knowledge Discovery, Orlando, FL, (Aug 1999) [pdf]

M.C. Burl, C. Fowlkes, J. Roden, A. Stechert, and S. Muukhtar, "Diamond Eye: A distributed Architecture for Image Data Mining", SPIE Conference on Data Minning and Knowledge Discovery, Orlando, FL (Apr 1999) [pdf]

C. W. Fowlkes and C. C. Fowlkes "Passive Solar Contributions to Residential Ventilation", Conservation in Buildings: Northwest Perspective, Butte, MT (May 1985) [pdf]


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